While the backup by action now offers an huge improvement over just manual backups there is still an issue with the system wide files like the Activity and Material Codebooks. All the system wide files can only backup to one file but you can selectively restore files. You have to backup the System Wide files manually and I recommend setting a regular schedule (like monthly) to keep the backup updated.  I also recommend keeping the backup somewhere other than the server. You can rename the HCSSDAT.Zip file after it has been created.

Screen1

Screen2